PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang09g01170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 320aa    MW: 36102.6 Da    PI: 7.2062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang09g01170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.6e-101359147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W teEd + +    ++G+g+W++++r+  ++R++k+c++rw + 
   Vang09g01170.1 13 RGVWATEEDTKKLAFGSKHGSGNWTSVPRKTRLKRCGKSCRLRWSNC 59
                     899*****************************9***********986 PP

2Myb_DNA-binding42.12.1e-1368109346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++Tt+E++l++++++  G++ W+ Ia+ ++ gRt++++k +w++
   Vang09g01170.1  68 NFTTQEEDLIIKLHAAIGSR-WSIIAQQLP-GRTDNDVKIYWNT 109
                      79******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.799860IPR017930Myb domain
SuperFamilySSF466891.62E-2210107IPR009057Homeodomain-like
SMARTSM007170.0011262IPR001005SANT/Myb domain
PfamPF002496.8E-81359IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-141567IPR009057Homeodomain-like
CDDcd001670.0011658No hitNo description
PROSITE profilePS5129418.49461115IPR017930Myb domain
SMARTSM007171.7E-1165113IPR001005SANT/Myb domain
CDDcd001677.47E-868111No hitNo description
PfamPF002496.9E-1268109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2068115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVRSPCEKVN VKRGVWATEE DTKKLAFGSK HGSGNWTSVP RKTRLKRCGK SCRLRWSNCL  60
RNDLKYDNFT TQEEDLIIKL HAAIGSRWSI IAQQLPGRTD NDVKIYWNTK LKKKLSEMGI  120
DPVTHKPFSK LIADYGNIGG CQKPSTRIGS INKDFKSAMM LKSEPHQTMP QGSTNINDQE  180
TTRNNFLFNR AHGDNLLMDF ENEMISGSML GEDRLSKTSS PSTPSTCSTS AFSWNDFLLL  240
EDDFTPLDYQ ETDTLVSKEN VVTIQSWNSK EVKSQHASGS SDFQFSSSSH TSFIEAMLDQ  300
ENEMFLSFPH LMEEPSNLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-21131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138144.11e-175hypothetical protein PHAVU_009G183800g
TrEMBLA0A0S3RG520.0A0A0S3RG52_PHAAN; Uncharacterized protein
STRINGGLYMA06G20020.21e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.13e-59MYB family protein